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Behnke, A., J. Bunge, K. Barger, H. W. Breiner, V. Alla, and T. Stoeck. (2006) "Microeukaryote Community Patterns Along an O-2." Applied and Environmental Microbiology. 72(5): 3626-36.

Bunge, J., S. S. Epstein, and D. G. Peterson. (2006) "Comment on "Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil"." Science. 313(5789)

Bunge, J., M. Fitzpatrick, and J. Handley. (1995) "Comparison of 3 Estimators of the Number of Species." Journal Of Applied Statistics. 22(1): 45-59.

Bunge, J., and M. Fitzpatrick. (1993) "Estimating the Number of Species - A Review." Journal Of The American Statistical Association. 88(421): 364-73.

---. "Estimating the Number of Species: Recent Developments." Technical Report #91-31. Cornell University Statistics Center, 1991

Bunge, J. A., and J. C. Handley. (1991) "Sampling to Estimate the Number of Duplicates in a Database." Computational Statistics and Data Analysis. 11(1)

Chao, A., and J. Bunge. (2002) "Estimating the Number of Species in a Stochastic Abundance Model." Biometrics. 58(3): 531-9.

Hong, Sun-Hee, John Bunge, Sun-Ok Jeon, and Slava S. Epstein. (2006) "Predicting Microbial Species Richness." Proceedings of the National Academy of Sciences. 103(1): 117-22.

Jeon, S. O., J . Bunge, T. Stoeck, K. J. A. Barger, S. H. Hong, and S. S. Epstein. (2006) "Synthetic Statistical Approach Reveals a High Degree of Richness of Microbial Eukaryotes in an Anoxic Water Column." Applied and Environmental Microbiology. 72(10): 6578-83.

Zuendorf, A., J. Bunge, A. Behnke, K. J. A. Barger, and T. Stoeck. (2006) "Diversity Estimates of Microeukaryotes Below the Chemocline of the Anoxic Mariager Fjord, Denmark." FEMS microbiology ecology. 58(3): 476-91.